Fix obsolete config keys
The config keys were drastically reorganized by #12010, but the docs don't reflect the updates, causing inconsistency and confusion. I checked for such obsolete configuration keys and updated to the new one. For reproducibility, I attach a small shell script that I used to examine the old keys. Now the script only detects `cargoExtraArgs` and `overrideCargo`, which originates from other type definition in the code but not from the configuration.
<details><summary>script</summary>
```bash
echo "allowMergingIntoGlobImports
exprFillDefault
importEnforceGranularity
importGranularity
importMergeBehavior
importMergeBehaviour
importGroup
importPrefix
warmup
loadOutDirsFromCheck
runBuildScripts
runBuildScriptsCommand
useRustcWrapperForBuildScripts
enableExperimental
procAttrMacros
breakPoints
exitPoints
yieldPoints
linksInHover
linksInHover
gotoTypeDef
chainingHints
closureReturnTypeHints
hideNamedConstructorHints
parameterHints
reborrowHints
typeHints
lruCapacity
cargoExtraArgs
overrideCargo
rustcSource
enableRangeFormatting
assist\.allowMergingIntoGlobImports
assist\.exprFillDefault
assist\.importEnforceGranularity
assist\.importGranularity
assist\.importMergeBehavior
assist\.importMergeBehaviour
assist\.importGroup
assist\.importPrefix
primeCaches\.enable
cache\.warmup
cargo\.loadOutDirsFromCheck
cargo\.runBuildScripts
cargo\.runBuildScriptsCommand
cargo\.useRustcWrapperForBuildScripts
completion\.snippets
diagnostics\.enableExperimental
experimental\.procAttrMacros
highlighting\.strings
highlightRelated\.breakPoints
highlightRelated\.exitPoints
highlightRelated\.yieldPoints
highlightRelated\.references
hover\.documentation
hover\.linksInHover
hoverActions\.linksInHover
hoverActions\.debug
hoverActions\.enable
hoverActions\.gotoTypeDef
hoverActions\.implementations
hoverActions\.references
hoverActions\.run
inlayHints\.chainingHints
inlayHints\.closureReturnTypeHints
inlayHints\.hideNamedConstructorHints
inlayHints\.parameterHints
inlayHints\.reborrowHints
inlayHints\.typeHints
lruCapacity
runnables\.cargoExtraArgs
runnables\.overrideCargo
rustcSource
rustfmt\.enableRangeFormatting
allFeatures
addCallArgumentSnippets
addCallParenthesis
callInfo\.full
cargo\.allFeatures
checkOnSave\.allFeatures
completion\.addCallArgumentSnippets
completion\.addCallParenthesis" | while read -r pattern
do
rg '\b'$pattern'\b([^.]|$)' . -g "!crates/rust-analyzer/src/config/patch_old_style.rs" -g "!editors/code/src/config.ts" -g "!a.sh" --no-heading --color=always --line-number
done
exit
excluded
# debug
# enable
# run
# implementations
# references
# documentation
# references
# snippets
# strings
# full
```
</details>
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